A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2763559



Internal ID10376239
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:65491200..65650767hg38UCSC Ensembl
Innerchr6:66201093..66360660hg19UCSC Ensembl
Innerchr6:66257814..66417381hg18UCSC Ensembl
Cytoband6q12
Allele length
AssemblyAllele length
hg38159568
hg19159568
hg18159568
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7032133
SamplesSW_1114
Known GenesEYS
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2763559
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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