A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2763448



Internal ID10376128
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:29875858..29886963hg38UCSC Ensembl
Innerchr5:29875965..29887070hg19UCSC Ensembl
Innerchr5:29911722..29922827hg18UCSC Ensembl
Cytoband5p13.3
Allele length
AssemblyAllele length
hg3811106
hg1911106
hg1811106
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7030998
SamplesSW_0887
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2763448
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer