A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2763060



Internal ID10030410
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:202380954..202421699hg38UCSC Ensembl
Innerchr2:203245677..203286422hg19UCSC Ensembl
Innerchr2:202953922..202994667hg18UCSC Ensembl
Cytoband2q33.1
Allele length
AssemblyAllele length
hg3840746
hg1940746
hg1840746
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7021900
SamplesSW_1097
Known GenesBMPR2
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2763060
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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