A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2762582



Internal ID10375380
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:21474503..21506299hg38UCSC Ensembl
Innerchr6:21474734..21506530hg19UCSC Ensembl
Innerchr6:21582713..21614509hg18UCSC Ensembl
Cytoband6p22.3
Allele length
AssemblyAllele length
hg3831797
hg1931797
hg1831797
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7013537
SamplesRW_0169
Known GenesLINC00581
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2762582
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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