A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2762469



Internal ID10375267
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:153417749..153459984hg38UCSC Ensembl
Innerchr4:154338901..154381136hg19UCSC Ensembl
Innerchr4:154558351..154600586hg18UCSC Ensembl
Cytoband4q31.3
Allele length
AssemblyAllele length
hg3842236
hg1942236
hg1842236
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7011996
SamplesRW_0637
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2762469
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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