A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2762435



Internal ID10375233
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:55612195..55627872hg38UCSC Ensembl
Innerchr4:56478362..56494039hg19UCSC Ensembl
Innerchr4:56173119..56188796hg18UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg3815678
hg1915678
hg1815678
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7010882
SamplesRW_0573
Known GenesNMU
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2762435
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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