A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2761929



Internal ID10029279
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:83482109..83516022hg38UCSC Ensembl
Innerchr16:83515714..83549627hg19UCSC Ensembl
Innerchr16:82073215..82107128hg18UCSC Ensembl
Cytoband16q23.3
Allele length
AssemblyAllele length
hg3833914
hg1933914
hg1833914
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7001486
SamplesSW_1216
Known GenesCDH13, MIR3182
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2761929
Frequency
Sample Size1109
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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