A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2761788



Internal ID10374586
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:23396367..23444447hg38UCSC Ensembl
Innerchr15:23641514..23689594hg19UCSC Ensembl
Innerchr15:21192955..21240687hg18UCSC Ensembl
Cytoband15q11.2
Allele length
AssemblyAllele length
hg3848081
hg1948081
hg1847733
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6999628, essv6999625, essv6999629, essv6999623, essv6999622, essv6999615, essv6999617, essv6999616, essv6999624, essv6999626, essv6999619, essv6999631, essv6999620, essv6999630, essv6999618, essv6999635, essv6999627
SamplesSW_1441, SW_0285, SW_1459, SW_1234, SW_1425, SW_1058, SW_0786, SW_0351, SW_1102, SW_0856, SW_0847, SW_1059, SW_0120, SW_0186, SW_0626, SW_1083, SW_1364
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2761788
Frequency
Sample Size1109
Observed Gain0
Observed Loss17
Observed Complex0
Frequencyn/a


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