A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2761295



Internal ID10377602
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:21258109..21281545hg38UCSC Ensembl
Innerchr9:21258108..21281544hg19UCSC Ensembl
Innerchr9:21248108..21271544hg18UCSC Ensembl
Cytoband9p21.3
Allele length
AssemblyAllele length
hg3823437
hg1923437
hg1823437
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7017612, essv7017610
SamplesRW_0252, RW_0328
Known GenesIFNA22P
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2761295
Frequency
Sample Size1109
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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