Variant Details

Variant: esv2761101

Internal ID

10377408

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr7:144173412..144392386	hg38	UCSC Ensembl
Inner	chr7:143870505..144089479	hg19	UCSC Ensembl
Inner	chr7:143501438..143720412	hg18	UCSC Ensembl

Cytoband

7q35

Allele length

Assembly	Allele length
hg38	218975
hg19	218975
hg18	218975

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv152e203

Supporting Variants

essv7015459, essv7015526, essv7015477, essv7015462, essv7015451, essv7015490, essv7015468, essv7015516, essv7015472, essv7015505, essv7015517, essv7015454, essv7015528, essv7015486, essv7015502, essv7015449, essv7015498, essv7015464, essv7015465, essv7015529, essv7015513, essv7015506, essv7015444, essv7015446, essv7015496, essv7015503, essv7015453, essv7015480, essv7015463, essv7015461, essv7015507, essv7015484, essv7015521, essv7015504, essv7015455, essv7015452, essv7015493, essv7015510, essv7015487, essv7015520, essv7015499, essv7015470, essv7015471, essv7015479, essv7015519, essv7015474, essv7015525, essv7015482, essv7015475, essv7015448, essv7015491, essv7015524, essv7015512, essv7015488, essv7015458, essv7015518, essv7015466, essv7015485, essv7015527, essv7015514, essv7015483, essv7015495, essv7015481, essv7015442, essv7015501, essv7015515, essv7015443, essv7015494, essv7015497, essv7015460, essv7015447, essv7015509, essv7015457, essv7015440, essv7015476, essv7015469, essv7015473, essv7015450, essv7015492, essv7015441, essv7015508

Samples

RW_0208, RW_0123, RW_0635, RW_0071, RW_0237, RW_0148, RW_0305, RW_0158, RW_0058, RW_0010, RW_0582, RW_0268, RW_0258, RW_0606, RW_0656, RW_0243, RW_0629, RW_0586, RW_0181, RW_0255, RW_0549, RW_0334, RW_0510, RW_0062, RW_0615, RW_0218, RW_0136, RW_0353, RW_0592, RW_0111, RW_0558, RW_0122, RW_0118, RW_0659, RW_0651, RW_0103, RW_0065, RW_0648, RW_0608, RW_0618, RW_0176, RW_0601, RW_0346, RW_0085, RW_0177, RW_0250, RW_0257, RW_0607, RW_0252, RW_0524, RW_0212, RW_0260, RW_0571, RW_0036, RW_0067, RW_0249, RW_0320, RW_0527, RW_0278, RW_0080, RW_0669, RW_0589, RW_0275, RW_0662, RW_0119, RW_0108, RW_0574, RW_0128, RW_0599, RW_0014, RW_0646, RW_0652, RW_0156, RW_0581, RW_0361, RW_0191, RW_0167, RW_0535, RW_0573, RW_0336, RW_0532

Known Genes

ARHGEF34P, ARHGEF35, ARHGEF5, CTAGE4, CTAGE8, OR2A1, OR2A20P, OR2A42, OR2A7, OR2A9P, RNU6-57P

Method

Merging

Analysis

Two different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.

Platform

Merging

Comments

Reference

Vogler_et_al_2010

Pubmed ID

21179565

Accession Number(s)

esv2761101

Frequency

Sample Size	1109
Observed Gain	44
Observed Loss	37
Observed Complex	0
Frequency	n/a