A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2760930



Internal ID10377237
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:20436787..20448700hg38UCSC Ensembl
Innerchr5:20436896..20448809hg19UCSC Ensembl
Innerchr5:20472653..20484566hg18UCSC Ensembl
Cytoband5p14.3
Allele length
AssemblyAllele length
hg3811914
hg1911914
hg1811914
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7012705, essv7012712, essv7012711, essv7012701, essv7012704, essv7012696, essv7012708, essv7012702, essv7012706, essv7012700, essv7012709, essv7012713, essv7012697, essv7012698, essv7012703, essv7012695, essv7012707
SamplesRW_0087, RW_0075, RW_0192, RW_0022, RW_0304, RW_0512, RW_0558, RW_0185, RW_0346, RW_0204, RW_0302, RW_0142, RW_0599, RW_0149, RW_0060, RW_0248, RW_0162
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2760930
Frequency
Sample Size1109
Observed Gain0
Observed Loss17
Observed Complex0
Frequencyn/a


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