Variant Details

Variant: esv2760816

Internal ID

10377123

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:119688113..119693141	hg38	UCSC Ensembl
Inner	chr4:120609268..120614296	hg19	UCSC Ensembl
Inner	chr4:120828716..120833744	hg18	UCSC Ensembl

Cytoband

4q26

Allele length

Assembly	Allele length
hg38	5029
hg19	5029
hg18	5029

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv7011696, essv7011697

Samples

RW_0624, RW_0539

Known Genes

Method

Merging

Analysis

Two different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.

Platform

Merging

Comments

Reference

Vogler_et_al_2010

Pubmed ID

21179565

Accession Number(s)

esv2760816

Frequency

Sample Size	1109
Observed Gain	0
Observed Loss	2
Observed Complex	0
Frequency	n/a