Variant Details

Variant: esv2760201

Internal ID

10376509

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:56565286..56601039	hg38	UCSC Ensembl
Inner	chr11:56332762..56368515	hg19	UCSC Ensembl
Inner	chr11:56089338..56125091	hg18	UCSC Ensembl

Cytoband

11q11

Allele length

Assembly	Allele length
hg38	35754
hg19	35754
hg18	35754

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv7020018, essv7020028, essv7020026, essv7020017, essv7020027, essv7020020, essv7020009, essv7020021, essv7020024, essv7020010, essv7020023, essv7020025, essv7020015, essv7020019, essv7020012, essv7020014, essv7020013, essv7020008, essv7020016

Samples

RW_0520, RW_0258, RW_0566, RW_0297, RW_0226, RW_0025, RW_0357, RW_0112, RW_0302, RW_0587, RW_0140, RW_0249, RW_0667, RW_0048, RW_0275, RW_0215, RW_0154, RW_0613, RW_0277

Known Genes

OR5M10

Method

Merging

Analysis

Two different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.

Platform

Merging

Comments

Reference

Vogler_et_al_2010

Pubmed ID

21179565

Accession Number(s)

esv2760201

Frequency

Sample Size	1109
Observed Gain	0
Observed Loss	19
Observed Complex	0
Frequency	n/a