A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2760160



Internal ID10027523
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:25184818..25207224hg38UCSC Ensembl
Innerchr10:25473747..25496153hg19UCSC Ensembl
Innerchr10:25513753..25536159hg18UCSC Ensembl
Cytoband10p12.1
Allele length
AssemblyAllele length
hg3822407
hg1922407
hg1822407
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7018231, essv7018232, essv7018235, essv7018234, essv7018230, essv7018236
SamplesRW_0022, RW_0082, RW_0280, RW_0176, RW_0571, RW_0184
Known GenesGPR158
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2760160
Frequency
Sample Size1109
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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