A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2760079



Internal ID10376387
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:115942312..115948700hg38UCSC Ensembl
Innerchr1:116484933..116491321hg19UCSC Ensembl
Innerchr1:116286456..116292844hg18UCSC Ensembl
Cytoband1p13.1
Allele length
AssemblyAllele length
hg386389
hg196389
hg186389
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv7006185, essv7006182, essv7006190, essv7006186, essv7006184, essv7006183, essv7006187
SamplesRW_0181, RW_0116, RW_0549, RW_0049, RW_0092, RW_0060, RW_0084
Known Genes
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2760079
Frequency
Sample Size1109
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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