A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2760078



Internal ID10376386
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:42118988..42396574hg38UCSC Ensembl
Innerchr10:42614436..42892022hg19UCSC Ensembl
Innerchr10:41934442..42212028hg18UCSC Ensembl
Cytoband10q11.1
Allele length
AssemblyAllele length
hg38277587
hg19277587
hg18277587
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6994647, essv6994648, essv6994649, essv6994650
SamplesSW_1436, SW_1404, SW_1346, SW_1308
Known GenesLOC441666
MethodMerging
AnalysisTwo different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.
PlatformMerging
Comments
ReferenceVogler_et_al_2010
Pubmed ID21179565
Accession Number(s)esv2760078
Frequency
Sample Size1109
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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