Variant Details

Variant: esv2760077

Internal ID

10376385

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:34622883..34648667	hg38	UCSC Ensembl
Inner	chr1:35088484..35114268	hg19	UCSC Ensembl
Inner	chr1:34861071..34886855	hg18	UCSC Ensembl

Cytoband

1p34.3

Allele length

Assembly	Allele length
hg38	25785
hg19	25785
hg18	25785

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv7027313, essv7025522, essv7026966, essv7025411, essv7027579, essv7027135, essv7027068, essv7026411, essv7027213, essv7024522, essv7027535, essv7027501, essv7026855, essv7027224, essv7027601, essv7027635, essv7027324, essv7026188, essv7027379, essv7025300, essv7027235, essv7027157, essv7027590, essv7027368, essv7027401, essv7027057, essv7026077, essv7027335, essv7027179, essv7027113, essv7025189, essv7027346, essv7027512, essv7027246, essv7027457, essv7024078, essv7027479, essv7023743, essv7027168, essv7023632, essv7027623, essv7027435, essv7027302, essv7027290, essv7023854, essv7027446, essv7024855, essv7027468, essv7027413, essv7027202, essv7027124, essv7027390, essv7027080, essv7027146, essv7027191, essv7025633, essv7027557, essv7024633, essv7027046, essv7027657, essv7026522, essv7026744, essv7027524, essv7026300, essv7024966, essv7023965, essv7027490, essv7027612, essv7027091, essv7024189, essv7027257, essv7027279, essv7027646, essv7025966, essv7025855, essv7025077, essv7027268, essv7027102, essv7027546, essv7024744, essv7027568, essv7026633, essv7025744, essv7027424, essv7027357, essv7024300, essv7024411

Samples

SW_1125, SW_0841, SW_1539, SW_0145, SW_1439, SW_0505, SW_0835, SW_0635, SW_1433, SW_1111, SW_0623, SW_0889, SW_1168, SW_0063, SW_0607, SW_1150, SW_1051, SW_0578, SW_0046, SW_1232, SW_1294, SW_0045, SW_0875, SW_0640, SW_0029, SW_0173, SW_1023, SW_0581, SW_0818, SW_1570, SW_0869, SW_0141, SW_1126, SW_0226, SW_0605, SW_1408, SW_1189, SW_1127, SW_0216, SW_1569, SW_0073, SW_1395, SW_1043, SW_0665, SW_1131, SW_1270, SW_0859, SW_0628, SW_1122, SW_1198, SW_1079, SW_0076, SW_0641, SW_0701, SW_1194, SW_1483, SW_0621, SW_1113, SW_0663, SW_0576, SW_0120, SW_1440, SW_1089, SW_1176, SW_1101, SW_1112, SW_0829, SW_0061, SW_1380, SW_0006, SW_1517, SW_0883, SW_1520, SW_1045, SW_0198, SW_0820, SW_1180, SW_0170, SW_0586, SW_0009, SW_1317, SW_1273, SW_1119, SW_0197, SW_1511, SW_0225, SW_0239

Known Genes

Method

Merging

Analysis

Two different algorithms (PennCNV and Birdseye) were applied to detect CNVs. Only congruent CNV events regarding direction of effect that were detected by both algorithms were merged using the outer borders of the event in a first step. In a second step only CNVs that were detected in at least two individuals were merged into a CNVR.

Platform

Merging

Comments

Reference

Vogler_et_al_2010

Pubmed ID

21179565

Accession Number(s)

esv2760077

Frequency

Sample Size	1109
Observed Gain	0
Observed Loss	87
Observed Complex	0
Frequency	n/a