Variant Details

Variant: esv2758796

Internal ID

9634255

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr20:46064276..46336238	hg38	UCSC Ensembl
Inner	chr20:44692915..44964876	hg19	UCSC Ensembl
Inner	chr20:44126322..44398283	hg18	UCSC Ensembl
Inner	chr20:44126322..44398283	hg17	UCSC Ensembl

Cytoband

20q13.12

Allele length

Assembly	Allele length
hg38	271963
hg19	271962
hg18	271962
hg17	271962

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

esv2758521

Samples

NA12717, NA19222, NA11830, NA19204, NA18861, NA18508, NA12814, NA18855, NA19145, NA18545, NA18504, NA12248, NA12865, NA10857, NA18870, NA18633, NA12750, NA07357, NA18969, NA18967, NA18563, NA19192, NA19171, NA18940, NA19201, NA10835, NA10846, NA18995, NA12802, NA18635, NA18558, NA18547, NA11992, NA18571, NA18964, NA18949, NA18970, NA07019, NA12156, NA19137, NA11994, NA19207, NA19172, NA19128, NA18966, NA19159, NA19209, NA18975, NA19200, NA11993, NA10847, NA18951, NA12760, NA12752, NA19194, NA12753, NA10863, NA19161, NA18859, NA19205, NA18637, NA18579, NA18871, NA18976, NA18981, NA12234, NA19208, NA19221, NA19202, NA18537, NA18573, NA19142, NA10830, NA12056, NA18912, NA12892, NA19154, NA12239, NA18853, NA19099, NA18555, NA06985, NA18523, NA19160, NA18570, NA18858, NA19094, NA18914, NA19206, NA18542, NA06991, NA18961, NA18863, NA19140, NA18913, NA19100, NA07348, NA19143, NA18501, NA19173, NA19211, NA18636, NA18500, NA18609, NA18506, NA19102, NA18854, NA18872, NA18852, NA07056, NA18505, NA18968, NA12006, NA18623, NA12154, NA07034, NA11832, NA18620

Known Genes

CD40, CDH22, NCOA5

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758796

Frequency

Sample Size	270
Observed Gain	0
Observed Loss	118
Observed Complex	0
Frequency	n/a