Variant Details

Variant: esv2758376

Internal ID

9633835

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:34250820..34696046	hg38	UCSC Ensembl
Inner	chr15:34543021..34988247	hg19	UCSC Ensembl
Inner	chr15:32330313..32775539	hg18	UCSC Ensembl
Inner	chr15:32330313..32775539	hg17	UCSC Ensembl

Cytoband

15q14

Allele length

Assembly	Allele length
hg38	445227
hg19	445227
hg18	445227
hg17	445227

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2760024

Supporting Variants

essv3728, essv433, essv22491, essv15807, essv12650, essv10466, essv16948, essv297, essv6286, essv13465, essv13147, essv5249, essv21072, essv18852, essv3552, essv16674, essv10835, essv5183, essv10241, essv13668, essv18333, essv18982, essv5056, essv3070, essv21838, essv18404, essv6986, essv3277, essv2587, essv11107, essv8777, essv3744, essv1379, essv22190, essv18171, essv8243, essv6915, essv21385, essv22110, essv16794, essv14489, essv13046, essv22400, essv3123, essv8911, essv16546, essv11850, essv19676, essv14327, essv22441, essv15357, essv13625, essv10572, essv24406, essv9355, essv6372, essv24811, essv20239, essv17724, essv22576, essv19538, essv1918, essv7705, essv3209, essv3890, essv20315, essv1602, essv16458, essv20154, essv17461, essv13933, essv7786, essv7576, essv6591, essv5151, essv24824, essv4187, essv868, essv6821, essv10307, essv20901, essv2455, essv21310, essv12273, essv10375, essv783, essv13755, essv10991, essv9025, essv22338, essv12322, essv569, essv19229, essv18615, essv23000, essv19942, essv14987, essv5915, essv4159, essv22920, essv12572, essv24936, essv21422, essv7155, essv1457, essv24998, essv10110, essv20116, essv22757, essv15509, essv12795, essv17103, essv3976, essv18066, essv17239, essv6699, essv2236, essv16104, essv4367, essv5392, essv11987, essv6386, essv4711, essv23048, essv3788, essv22084, essv21223, essv5995, essv18253, essv24535, essv2090, essv15597, essv6182, essv22637, essv10008, essv23480, essv4468, essv8139, essv24039, essv1505, essv23240, essv19176, essv6745, essv5561, essv9178, essv17928, essv7117, essv1147, essv11712, essv24571, essv23198, essv373, essv1901, essv4886, essv19406, essv23681, essv2679, essv16279, essv23613, essv23792, essv17791, essv23566, essv5710, essv4548, essv10700, essv8420, essv13526, essv8830, essv14157, essv12482, essv15736, essv14710, essv5479, essv20409, essv7371, essv14414, essv24266, essv23886, essv21997, essv11791, essv17621, essv20792, essv22850, essv4280, essv20573, essv19644, essv5126, essv21791, essv17661, essv7869, essv1774, essv4639, essv23382, essv232, essv8302, essv24141, essv15119, essv17498, essv9424, essv7275, essv9600, essv23420, essv2792, essv5824, essv21543, essv1224, essv7305, essv23135, essv13020, essv18112, essv4828, essv22418, essv18706

Samples

NA18998, NA19141, NA12717, NA19222, NA11830, NA18621, NA18947, NA11995, NA18862, NA18592, NA18508, NA12814, NA18524, NA18980, NA18855, NA12236, NA18561, NA18999, NA18603, NA19092, NA12751, NA18545, NA07029, NA12004, NA12801, NA18504, NA12146, NA18959, NA12865, NA10857, NA19098, NA18870, NA18526, NA18633, NA12750, NA12155, NA07357, NA18969, NA12813, NA18967, NA18563, NA19127, NA19192, NA18944, NA18550, NA12812, NA19201, NA10846, NA18995, NA10854, NA12802, NA19119, NA12891, NA18558, NA18547, NA19131, NA18942, NA11992, NA18571, NA12762, NA19138, NA18964, NA06993, NA19130, NA18949, NA18611, NA12761, NA12005, NA18970, NA07019, NA12156, NA19137, NA12044, NA11994, NA19207, NA19172, NA19128, NA18966, NA19159, NA18990, NA10839, NA19200, NA11993, NA19007, NA10847, NA18605, NA19210, NA12760, NA12752, NA19120, NA19194, NA12753, NA12003, NA10863, NA10831, NA19152, NA12878, NA12872, NA19161, NA18956, NA18859, NA18515, NA18529, NA18516, NA18579, NA18871, NA19103, NA18572, NA18976, NA18948, NA18503, NA11839, NA10838, NA18981, NA12234, NA19208, NA19221, NA19202, NA18537, NA18566, NA18573, NA19142, NA19000, NA11840, NA10830, NA12249, NA19154, NA18532, NA12239, NA18853, NA12264, NA12145, NA19099, NA12707, NA19101, NA18555, NA07345, NA12144, NA06985, NA19160, NA19132, NA10856, NA18570, NA18593, NA18974, NA18576, NA12043, NA18608, NA18978, NA18632, NA11882, NA19206, NA18542, NA06991, NA11881, NA18961, NA18952, NA18517, NA12864, NA18540, NA18564, NA12057, NA10859, NA19140, NA19240, NA19100, NA12873, NA19144, NA10861, NA18943, NA12874, NA07348, NA12763, NA18594, NA19143, NA12740, NA06994, NA18971, NA19223, NA18987, NA19211, NA18994, NA10860, NA18636, NA18500, NA18609, NA18506, NA19102, NA12875, NA18854, NA19116, NA18972, NA18872, NA18552, NA18852, NA07056, NA18505, NA19129, NA18624, NA19139, NA12006, NA18623, NA07000, NA12154, NA07034, NA18612, NA18622, NA19153, NA18562, NA18965, NA18577, NA11832, NA18997

Known Genes

GOLGA8A, GOLGA8B, LPCAT4, MIR1233-1, MIR1233-2, MIR5588, NOP10, NUTM1, SLC12A6

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758376

Frequency

Sample Size	270
Observed Gain	211
Observed Loss	2
Observed Complex	0
Frequency	n/a