Variant Details

Variant: esv2758375

Internal ID

9633834

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:31474097..32694378	hg38	UCSC Ensembl
Inner	chr15:31766300..32986579	hg19	UCSC Ensembl
Inner	chr15:29553592..30773871	hg18	UCSC Ensembl
Inner	chr15:29553592..30773871	hg17	UCSC Ensembl

Cytoband

15q13.3

Allele length

Assembly	Allele length
hg38	1220282
hg19	1220280
hg18	1220280
hg17	1220280

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2760023

Supporting Variants

essv5729, essv11678, essv4256, essv13060, essv22063, essv13684, essv19919, essv11125, essv22382, essv7426, essv9065, essv14200, essv15892, essv23218, essv5225, essv24224, essv7761, essv21221, essv24582, essv15869, essv24294, essv21143, essv8209, essv6973, essv22414, essv13139, essv13595, essv17817, essv10825, essv8436, essv20962, essv17785, essv5102, essv19612, essv19091, essv14429, essv10783, essv1948, essv3058, essv15753, essv19199, essv808, essv9973, essv14547, essv10252, essv13809, essv10437, essv1341, essv12331, essv24746, essv5047, essv14977, essv9474, essv19657, essv16252, essv12449, essv16643, essv12463, essv18345, essv16805, essv19930, essv21211, essv2186, essv20424, essv17651, essv2583, essv21316, essv11635, essv4247, essv23798, essv11888, essv12200

Samples

NA11830, NA18603, NA12801, NA18959, NA12865, NA18870, NA12155, NA12813, NA19127, NA19201, NA19119, NA19131, NA18960, NA11992, NA18582, NA19138, NA18611, NA12156, NA11994, NA19207, NA12815, NA18990, NA18973, NA19007, NA10831, NA19152, NA12878, NA19161, NA18515, NA18516, NA18871, NA18981, NA19208, NA19221, NA19202, NA19142, NA10830, NA19154, NA12264, NA19099, NA19101, NA18523, NA19132, NA10856, NA18593, NA18576, NA18542, NA11881, NA19140, NA10861, NA12763, NA07055, NA19223, NA19211, NA10860, NA19102, NA12875, NA19116, NA18872, NA18852, NA18623, NA12154, NA19153, NA18577

Known Genes

ARHGAP11A, CHRNA7, GOLGA8K, GOLGA8O, GOLGA8R, LOC100996255, OTUD7A, SCG5, ULK4P1, ULK4P2, ULK4P3, WHAMMP1

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758375

Frequency

Sample Size	270
Observed Gain	6
Observed Loss	61
Observed Complex	0
Frequency	n/a