Variant Details

Variant: esv2758374

Internal ID

9980451

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:30000741..30860288	hg38	UCSC Ensembl
Inner	chr15:30292944..31152491	hg19	UCSC Ensembl
Inner	chr15:28080236..28939783	hg18	UCSC Ensembl
Inner	chr15:28080236..28939783	hg17	UCSC Ensembl

Cytoband

15q13.1

Allele length

Assembly	Allele length
hg38	859548
hg19	859548
hg18	859548
hg17	859548

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2760022

Supporting Variants

essv9464, essv21212, essv12305, essv19107, essv15091, essv894, essv13763, essv8229, essv2995, essv2162, essv11708, essv14189, essv16239, essv17670, essv23197, essv7748, essv1348, essv24581, essv9995, essv20956, essv17780, essv13699, essv7417, essv5020, essv21131, essv24257, essv19969, essv11130, essv19681, essv18332, essv21239, essv5089, essv14990, essv4279, essv14461, essv1014, essv11877, essv22390, essv13042, essv12471, essv10443, essv7285, essv22044, essv19200, essv10734, essv5735, essv24748, essv21319, essv13164, essv23800, essv2602, essv1955, essv13607, essv12198, essv15746, essv5195, essv9017, essv10258, essv842, essv16812, essv16297, essv14525, essv8427, essv15867, essv22409, essv20430, essv10818, essv16681

Samples

NA11830, NA18592, NA18603, NA12801, NA18959, NA12865, NA18870, NA12813, NA19127, NA19005, NA19201, NA19119, NA19131, NA18960, NA11992, NA19138, NA18611, NA12156, NA11994, NA19207, NA12815, NA18990, NA18973, NA19007, NA10831, NA19152, NA12878, NA19161, NA18515, NA18516, NA18871, NA18981, NA19208, NA19221, NA19202, NA19142, NA19000, NA10830, NA19154, NA12264, NA19099, NA19101, NA18523, NA19132, NA10856, NA18593, NA18576, NA18542, NA11881, NA19140, NA10861, NA12763, NA07055, NA19223, NA19211, NA10860, NA19102, NA12875, NA19116, NA18872, NA18852, NA19129, NA18623, NA12154, NA19153, NA18577

Known Genes

ARHGAP11B, CHRFAM7A, DKFZP434L187, GOLGA8H, GOLGA8J, GOLGA8T, HERC2P10, LOC100288637, LOC101059918, ULK4P1, ULK4P2, ULK4P3

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758374

Frequency

Sample Size	270
Observed Gain	2
Observed Loss	64
Observed Complex	0
Frequency	n/a