Variant Details

Variant: esv2758271

Internal ID

9633730

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:55454944..55854408	hg38	UCSC Ensembl
Inner	chr11:55222420..55621884	hg19	UCSC Ensembl
Inner	chr11:54978996..55378460	hg18	UCSC Ensembl
Inner	chr11:54978996..55378460	hg17	UCSC Ensembl

Cytoband

11q11

Allele length

Assembly	Allele length
hg38	399465
hg19	399465
hg18	399465
hg17	399465

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2759828

Supporting Variants

essv24992, essv15072, essv12257, essv28, essv23802, essv10941, essv780, essv3472, essv5508, essv20023, essv13886, essv9676, essv5099, essv567, essv19578, essv21031, essv17979, essv451, essv20181, essv11189, essv5294, essv9202, essv348, essv10123, essv14649, essv21821, essv15227, essv4475, essv1728, essv921, essv11623, essv13066, essv177, essv24692, essv23967, essv4545, essv17565, essv6312, essv15899, essv19461, essv8625, essv7115, essv6187, essv13010, essv22861

Samples

NA18998, NA11829, NA12814, NA18524, NA07048, NA12762, NA19130, NA19128, NA19239, NA19209, NA10839, NA12760, NA12003, NA18956, NA18859, NA18991, NA11839, NA18537, NA19000, NA11840, NA19154, NA18532, NA19101, NA19094, NA18632, NA06991, NA18952, NA12864, NA18913, NA18992, NA12763, NA18971, NA19223, NA19211, NA19093, NA18609, NA18854, NA18552, NA18852, NA19129, NA18968, NA18624, NA18577, NA11832, NA18997

Known Genes

OR4C11, OR4C15, OR4C16, OR4C6, OR4P4, OR4S2, OR5D13, OR5D14, OR5D16, OR5D18, OR5L1, OR5L2

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758271

Frequency

Sample Size	270
Observed Gain	0
Observed Loss	45
Observed Complex	0
Frequency	n/a