Variant Details

Variant: esv2758250

Internal ID

9633709

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:409846..1336162	hg38	UCSC Ensembl
Inner	chr11:409846..1357392	hg19	UCSC Ensembl
Inner	chr11:399846..1313968	hg18	UCSC Ensembl
Inner	chr11:399846..1313968	hg17	UCSC Ensembl

Cytoband

11p15.5

Allele length

Assembly	Allele length
hg38	926317
hg19	947547
hg18	914123
hg17	914123

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2759794

Supporting Variants

essv18932, essv9413, essv17973, essv19614, essv14551, essv10018, essv24733, essv20661, essv4417, essv5022, essv1926, essv9938, essv23497, essv8741, essv21544, essv20158, essv14192, essv1486, essv15352, essv9829, essv13539, essv7616, essv6819, essv7212, essv11082, essv19573, essv23843, essv22047, essv15558, essv3132, essv15798, essv21779, essv19914, essv13461, essv23374, essv11213, essv858, essv3864, essv11673, essv23627, essv488, essv22241, essv12158, essv17737, essv13843, essv15261, essv12674, essv24366, essv22130, essv12763, essv8350, essv3764, essv16231, essv6655, essv4807, essv16731, essv14323, essv5411, essv4488, essv1769, essv24248, essv24126, essv21443, essv22487, essv20416, essv8605, essv4019, essv10739, essv6041, essv13099, essv4971, essv22758, essv16856, essv390, essv8856, essv2635, essv7867, essv11444, essv20255, essv1449, essv22956, essv272, essv20131, essv681, essv22587, essv3467, essv8917, essv14112, essv10651, essv17116, essv2244, essv10567, essv5137, essv24040, essv19161, essv21979, essv16531, essv23208, essv11734, essv14447, essv7088, essv1881, essv17622, essv4137, essv253, essv18338, essv15999, essv15409, essv23974, essv16760, essv11515, essv3544, essv25005, essv3055, essv15148, essv10272, essv10868, essv2345, essv7720, essv12798, essv6355, essv11045, essv22885, essv24468, essv21005, essv8305, essv9717, essv20335, essv9197, essv17812, essv6644, essv6234, essv19763, essv1007, essv1196, essv18390, essv15489, essv20957, essv24755, essv23118, essv18155, essv15012, essv4559, essv17098, essv22682, essv24559, essv2164, essv18265, essv4659, essv21314, essv1274, essv21736, essv17672, essv112, essv7787, essv21121, essv16114, essv23821, essv9330, essv20067, essv1099, essv20627, essv19235, essv804, essv7043, essv15682

Samples

NA12717, NA19203, NA18621, NA11995, NA11829, NA19204, NA18862, NA18861, NA18508, NA18524, NA18980, NA18855, NA12236, NA19145, NA19092, NA18545, NA12801, NA18504, NA12248, NA18959, NA12865, NA10857, NA18870, NA18633, NA12750, NA12155, NA07357, NA18969, NA12813, NA18967, NA18563, NA19192, NA19171, NA19005, NA18944, NA18940, NA19201, NA10835, NA10846, NA18995, NA12891, NA18558, NA18547, NA19131, NA18960, NA11992, NA07048, NA18571, NA18964, NA12005, NA18970, NA07019, NA12156, NA19137, NA12044, NA11994, NA19172, NA19128, NA18966, NA12815, NA19239, NA10839, NA18975, NA18973, NA19200, NA11993, NA10847, NA18951, NA19210, NA12760, NA12752, NA19120, NA07022, NA19194, NA12753, NA12003, NA10831, NA12878, NA12872, NA19161, NA19205, NA18637, NA18579, NA18871, NA19103, NA18976, NA18948, NA10838, NA18981, NA19208, NA19202, NA18537, NA18573, NA19142, NA19000, NA10830, NA12249, NA12056, NA18912, NA12892, NA19154, NA18857, NA12239, NA18853, NA19099, NA12707, NA19101, NA18555, NA07345, NA12144, NA18523, NA19160, NA10856, NA18858, NA18576, NA18608, NA19094, NA18978, NA18914, NA11882, NA18542, NA06991, NA12716, NA11881, NA18961, NA18952, NA12864, NA18863, NA18564, NA10859, NA19140, NA18913, NA19240, NA19100, NA12873, NA18992, NA07348, NA12763, NA18594, NA19143, NA18501, NA18971, NA19173, NA19211, NA18994, NA10860, NA18636, NA18500, NA18609, NA18506, NA18854, NA18872, NA18552, NA18852, NA07056, NA18505, NA19129, NA18968, NA12006, NA12154, NA07034, NA18612, NA18965, NA11832, NA18620, NA18997

Known Genes

ANO9, AP2A2, C11orf35, CD151, CDHR5, CEND1, CHID1, DEAF1, DRD4, EFCAB4A, EPS8L2, HRAS, IRF7, LOC143666, LRRC56, MIR210, MIR210HG, MIR6744, MUC2, MUC5B, MUC6, NS3BP, PDDC1, PHRF1, PIDD, PNPLA2, POLR2L, PTDSS2, RASSF7, RNH1, RPLP2, SCT, SIGIRR, SLC25A22, SNORA52, TALDO1, TMEM80, TOLLIP, TOLLIP-AS1, TSPAN4

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758250

Frequency

Sample Size	270
Observed Gain	0
Observed Loss	166
Observed Complex	0
Frequency	n/a