Variant Details

Variant: esv2758138

Internal ID

9633597

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr7:143450682..144671545	hg38	UCSC Ensembl
Inner	chr7:143147775..144368638	hg19	UCSC Ensembl
Inner	chr7:142857897..143999571	hg18	UCSC Ensembl
Inner	chr7:142664612..143806286	hg17	UCSC Ensembl

Cytoband

7q35

Allele length

Assembly	Allele length
hg38	1220864
hg19	1220864
hg18	1141675
hg17	1141675

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2759570

Supporting Variants

essv11449, essv23796, essv5716, essv5585, essv24525, essv24579, essv17731, essv237, essv15855, essv21985, essv11881, essv11261, essv18727, essv23140, essv10582, essv13587, essv6382, essv8314, essv21449, essv4004, essv15606, essv23175, essv5816, essv3772, essv22341, essv1497, essv3288, essv2444, essv23256, essv8756, essv7694, essv16683, essv6338, essv15057, essv6988, essv1873, essv13413, essv9207, essv12343, essv2241, essv10771, essv9423, essv14403, essv15635, essv19901, essv12541, essv310, essv17436, essv17077, essv13734, essv9643, essv23071, essv20207, essv16488, essv24291, essv12724, essv19987, essv16837, essv9889, essv3368, essv12726, essv7354, essv14085, essv3114, essv24915, essv4258, essv7804, essv12275, essv9651, essv5573, essv4489, essv8163, essv17471, essv7148, essv10869, essv17036, essv9030, essv3984, essv12488, essv17151, essv12984, essv9019, essv533, essv22180, essv4700, essv15416, essv8912, essv10131, essv20227, essv5054, essv21841, essv15510, essv6401, essv5148, essv8600, essv4873, essv24481, essv4090, essv18973, essv13738, essv6616, essv9737, essv14476, essv13673, essv13554, essv19287, essv13923, essv11938, essv3701, essv9133, essv24577, essv6719, essv14971, essv8189, essv10851, essv7313, essv4636, essv23672, essv1387, essv810, essv7066, essv11629, essv24813, essv9421, essv23626, essv13473, essv11052, essv12835, essv22316, essv5026, essv17281, essv14092, essv17226, essv1606, essv20196, essv111, essv9779, essv900, essv21141, essv5202, essv17041, essv22421, essv3180, essv14619, essv15253, essv22904, essv8366, essv5260, essv16133, essv8389, essv23838, essv16255, essv6293, essv5510, essv17831, essv13644, essv9397, essv11438, essv2787, essv22163, essv19592, essv4424, essv16414, essv2811, essv2588, essv8849, essv13784, essv17190, essv16332, essv19668, essv1765, essv21195, essv7603, essv18279, essv13142, essv24971, essv24125, essv24693, essv10476, essv16811, essv10197, essv2651, essv10648, essv15344, essv18364, essv4136, essv24424, essv14135, essv11582, essv24899, essv1622, essv12327, essv7378, essv15737, essv23991, essv23458, essv23987, essv14995, essv14420, essv4134, essv12405, essv19655, essv11965, essv14313, essv14563, essv15479, essv2271, essv11824, essv23249, essv10220, essv4726, essv12468, essv15732, essv2315, essv3794, essv22819, essv11145, essv652, essv22074, essv16762, essv8476, essv24775, essv4680, essv19405, essv17898, essv18453, essv1218, essv18723, essv23443, essv21174, essv368, essv20118, essv2537, essv12681, essv9763, essv4606, essv22683, essv10919, essv10383, essv21529, essv1399, essv10345, essv17276, essv5385, essv10075, essv551, essv8280, essv668, essv20562, essv12231, essv210, essv14857, essv3892, essv7274, essv1952, essv4192, essv23326, essv15098, essv9247, essv15347

Samples

NA18998, NA18502, NA19141, NA12717, NA19222, NA11830, NA19203, NA18621, NA18947, NA11995, NA11829, NA19204, NA18862, NA18861, NA18592, NA18508, NA18524, NA18980, NA18855, NA18561, NA18507, NA19145, NA18999, NA18603, NA19092, NA18545, NA07029, NA12004, NA18959, NA10857, NA19098, NA18870, NA18526, NA18633, NA12750, NA12155, NA18969, NA12813, NA18967, NA18563, NA19127, NA19192, NA19171, NA18940, NA12812, NA19201, NA10846, NA10854, NA12802, NA19119, NA18635, NA18860, NA12891, NA18558, NA18547, NA19131, NA18942, NA11992, NA07048, NA12762, NA19138, NA19130, NA18611, NA12005, NA18970, NA12156, NA19137, NA19238, NA12044, NA19207, NA19172, NA19128, NA18966, NA12815, NA18990, NA19239, NA19209, NA10839, NA18975, NA18973, NA19200, NA19007, NA11831, NA10847, NA18951, NA19210, NA12760, NA12752, NA19120, NA07022, NA19194, NA12003, NA10863, NA10831, NA19152, NA12872, NA19161, NA18859, NA18515, NA19205, NA18529, NA18516, NA18871, NA19103, NA18572, NA18976, NA18948, NA18503, NA11839, NA10838, NA19208, NA19221, NA19202, NA18537, NA18566, NA18573, NA19142, NA19000, NA11840, NA18856, NA12249, NA12056, NA18912, NA19154, NA18857, NA18853, NA12264, NA19099, NA12707, NA19101, NA18555, NA07345, NA12144, NA06985, NA18523, NA19160, NA19132, NA10856, NA18570, NA18858, NA18593, NA18945, NA19012, NA18576, NA12043, NA18608, NA19094, NA19003, NA18978, NA18914, NA18632, NA19206, NA12716, NA18961, NA18517, NA18863, NA18564, NA19140, NA18913, NA19240, NA19100, NA12873, NA19144, NA10861, NA18943, NA19193, NA12874, NA12763, NA18594, NA19143, NA06994, NA18971, NA19223, NA19173, NA18987, NA19211, NA18994, NA19093, NA10860, NA18521, NA18500, NA18609, NA18506, NA19102, NA18854, NA19116, NA18972, NA18872, NA18552, NA07056, NA18505, NA19129, NA18968, NA18624, NA19139, NA12006, NA18623, NA18522, NA12154, NA07034, NA18612, NA18622, NA19153, NA11832, NA18620, NA18997

Known Genes

ARHGEF34P, ARHGEF35, ARHGEF5, CTAGE15, CTAGE4, CTAGE6, CTAGE8, EPHA1-AS1, FAM115A, FAM115C, LOC154761, NOBOX, OR2A1, OR2A12, OR2A14, OR2A2, OR2A20P, OR2A25, OR2A42, OR2A5, OR2A7, OR2A9P, OR2F1, OR2F2, OR6B1, RNU6-57P, TAS2R41, TPK1

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2758138

Frequency

Sample Size	270
Observed Gain	114
Observed Loss	140
Observed Complex	0
Frequency	n/a