Variant Details

Variant: esv2757914

Internal ID

9633373

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:197128182..197770997	hg38	UCSC Ensembl
Inner	chr3:196855053..197497868	hg19	UCSC Ensembl
Inner	chr3:198339450..198982265	hg18	UCSC Ensembl
Inner	chr3:198343363..198986178	hg17	UCSC Ensembl

Cytoband

3q29

Allele length

Assembly	Allele length
hg38	642816
hg19	642816
hg18	642816
hg17	642816

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2759214

Supporting Variants

essv3050, essv20087, essv4723, essv18850, essv22831, essv17254, essv14642, essv22769, essv19254, essv23378, essv1960, essv23147, essv25014, essv10833, essv15818, essv19185, essv17807, essv12232, essv8604, essv18775, essv8141, essv17638, essv16998, essv21262, essv22970, essv16251, essv22521, essv11770, essv9241, essv16340, essv11975, essv24061, essv10152, essv21379, essv19276, essv13728, essv2785, essv18068, essv23776, essv16020, essv10078, essv24886, essv19011, essv2206, essv12686, essv12715, essv24836, essv16242, essv15700, essv15456, essv17959, essv23080, essv10312, essv22356, essv9679, essv24132, essv18397, essv4767, essv1490, essv11831, essv2047, essv254, essv22581, essv23463, essv14336, essv6127, essv23427, essv21192, essv19911, essv8938, essv9905, essv10100, essv8792, essv1516, essv6670, essv15873, essv13934, essv14695, essv21782, essv18291, essv18353, essv24710, essv69, essv13920, essv17889, essv13134, essv14550, essv13531

Samples

NA11830, NA11829, NA18508, NA18980, NA19145, NA12751, NA12004, NA18504, NA18959, NA12865, NA12750, NA07357, NA12813, NA12812, NA10846, NA10854, NA19119, NA12891, NA18960, NA07048, NA19130, NA18949, NA12005, NA07019, NA11994, NA19128, NA19159, NA10855, NA19239, NA10839, NA19200, NA10847, NA19194, NA12753, NA12003, NA10831, NA19161, NA18991, NA18871, NA18948, NA18503, NA10838, NA18981, NA19202, NA12249, NA18912, NA18532, NA12239, NA12145, NA19099, NA19101, NA19160, NA18608, NA18914, NA11882, NA19206, NA18517, NA10859, NA18913, NA19144, NA19193, NA12874, NA07348, NA12763, NA18501, NA12740, NA19223, NA18987, NA19093, NA18521, NA18500, NA18506, NA19102, NA12875, NA18854, NA18505, NA07000, NA07034, NA18620

Known Genes

BDH1, DLG1, DLG1-AS1, FYTTD1, KIAA0226, LOC220729, MIR4797, MIR922

Method

BAC aCGH

Analysis

Array images were acquired using an Agilent laser scanner (Agilent Technologies, UK). Fluorescence intensities and log2 ratio values were extracted using Bluefuse software (Bluegnome Ltd).

Platform

Agilent

Comments

Reference

Redon_et_al_2006

Pubmed ID

17122850

Accession Number(s)

esv2757914

Frequency

Sample Size	270
Observed Gain	30
Observed Loss	56
Observed Complex	0
Frequency	n/a