A curated catalogue of human genomic structural variation




Variant Details

Variant: esv27574



Internal ID11044807
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:4997947..5015255hg38UCSC Ensembl
Innerchr19:4997958..5015266hg19UCSC Ensembl
Innerchr19:4948958..4966266hg18UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg3817309
hg1917309
hg1817309
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv16012
SamplesNA12287
Known GenesKDM4B
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv27574
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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