A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2749803



Internal ID10330773
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:67609497..67609618hg38UCSC Ensembl
Outerchr15:67901835..67901956hg19UCSC Ensembl
Cytoband15q23
Allele length
AssemblyAllele length
hg38122
hg19122
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6665325, essv6857868, essv6673844, essv6959979, essv6867691, essv6966462, essv6851870
SamplesSSM027, SSM087, SSM029, SSM026, SSM089, SSM031, SSM086
Known GenesMAP2K5
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2749803
Frequency
Sample Size96
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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