A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2748320



Internal ID10329290
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:113541521..113542369hg38UCSC Ensembl
Outerchr13:114195836..114196684hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38849
hg19849
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv255e201
Supporting Variantsessv6888180, essv6819994, essv6846134, essv6966191, essv6788017, essv6857585, essv6796275, essv6862670, essv6891475, essv6779682, essv6888179, essv6812391, essv6717047, essv6800471, essv6702695, essv6823882, essv6713211, essv6920454, essv6862669, essv6977671, essv6803657, essv6932114, essv6796274, essv6882504, essv6838850, essv6945225, essv6788016, essv6681825, essv6894879, essv6867461, essv6924577, essv6867887, essv6688755, essv6673558, essv6873854, essv6819993, essv6806556
SamplesSSM083, SSM071, SSM027, SSM011, SSM079, SSM087, SSM097, SSM039, SSM073, SSM074, SSM042, SSM088, SSM023, SSM018, SSM069, SSM029, SSM096, SSM089, SSM017, SSM094, SSM031, SSM067, SSM033, SSM085, SSM072, SSM020, SSM078, SSM005, SSM076, SSM091, SSM043, SSM098
Known GenesTMCO3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2748320
Frequency
Sample Size96
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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