A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2748315



Internal ID10329285
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:113541044..113542369hg38UCSC Ensembl
Outerchr13:114195359..114196684hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg381326
hg191326
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6823881, essv6857584, essv6761136, essv6835096, essv6945224, essv6796275, essv6901432, essv6885238, essv6779682, essv6945226, essv6888179, essv6891474, essv6702695, essv6928123, essv6823882, essv6713211, essv6862669, essv6977670, essv6803657, essv6932114, essv6796274, essv6882504, essv6838850, essv6945225, essv6953488, essv6870895, essv6788016, essv6728557, essv6842690, essv6681825, essv6949337, essv6720928, essv6894879, essv6738064, essv6846133, essv6732360, essv6867887, essv6807898, essv6706422, essv6819993, essv6971088, essv6806556, essv6910163
SamplesSSM083, SSM071, SSM024, SSM046, SSM011, SSM079, SSM087, SSM097, SSM039, SSM009, SSM073, SSM050, SSM074, SSM042, SSM088, SSM002, SSM023, SSM028, SSM084, SSM090, SSM047, SSM069, SSM061, SSM029, SSM096, SSM019, SSM094, SSM067, SSM044, SSM033, SSM085, SSM040, SSM082, SSM020, SSM078, SSM095, SSM025, SSM098, SSM012
Known GenesTMCO3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2748315
Frequency
Sample Size96
Observed Gain0
Observed Loss39
Observed Complex0
Frequencyn/a


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