A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2748106



Internal ID10329076
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:111959670..111960574hg38UCSC Ensembl
Outerchr13:112613984..112614888hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38905
hg19905
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6749841, essv6932087, essv6681802, essv6945191, essv6924556, essv6772286, essv6897807, essv6800444, essv6966164, essv6977641, essv6787985, essv6928101, essv6870882, essv6920431, essv6717018, essv6851559, essv6916320, essv6846118, essv6779663, essv6732342, essv6940565, essv6823860, essv6709681, essv6807743, essv6783782, essv6775904, essv6959645, essv6713191, essv6720904, essv6685284, essv6792069, essv6901299, essv6796248, essv6905100, essv6894852, essv6741281, essv6673522, essv6695788, essv6842658, essv6706405, essv6774298, essv6835071, essv6912826, essv6949312, essv6900792, essv6831532
SamplesSSM100, SSM008, SSM071, SSM027, SSM024, SSM079, SSM065, SSM013, SSM009, SSM042, SSM041, SSM023, SSM084, SSM090, SSM047, SSM018, SSM069, SSM029, SSM026, SSM017, SSM019, SSM031, SSM067, SSM044, SSM086, SSM033, SSM066, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM015, SSM016, SSM037, SSM022, SSM070, SSM034, SSM099, SSM043, SSM052, SSM098, SSM056, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2748106
Frequency
Sample Size96
Observed Gain0
Observed Loss46
Observed Complex0
Frequencyn/a


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