A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2748037



Internal ID10329007
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:110676979..110677492hg38UCSC Ensembl
Outerchr13:111329326..111329839hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38514
hg19514
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6846115, essv6894848, essv6772281, essv6728527, essv6842652, essv6796241, essv6673507, essv6741278, essv6787978, essv6920424, essv6882490, essv6702673, essv6717012, essv6732337, essv6851552, essv6940561, essv6724694, essv6706402, essv6803646, essv6749838, essv6953454, essv6768663, essv6971049, essv6940806, essv6792062, essv6959631, essv6949304, essv6945183, essv6838823, essv6735376, essv6857558, essv6916316, essv6815637
SamplesSSM083, SSM071, SSM024, SSM045, SSM046, SSM064, SSM065, SSM087, SSM039, SSM073, SSM023, SSM028, SSM084, SSM047, SSM069, SSM026, SSM017, SSM094, SSM003, SSM031, SSM001, SSM086, SSM085, SSM040, SSM016, SSM077, SSM022, SSM070, SSM025, SSM043, SSM052, SSM098, SSM056
Known GenesCARS2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2748037
Frequency
Sample Size96
Observed Gain0
Observed Loss33
Observed Complex0
Frequencyn/a


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