A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2748014



Internal ID10328984
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:110408272..110409579hg38UCSC Ensembl
Outerchr13:111060619..111061926hg19UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg381308
hg191308
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6812378, essv6966148, essv6755740, essv6744179, essv6812379, essv6678031, essv6891462, essv6752725, essv6901243, essv6909095, essv6823851, essv6709679, essv6720898, essv6819972, essv6749837, essv6772278, essv6888160, essv6936383, essv6688457, essv6724693, essv6882489, essv6977629, essv6867732, essv6857557, essv6735265, essv6763514, essv6959627, essv6862645, essv6827944, essv6761124, essv6809561, essv6851551, essv6807676, essv6735333, essv6673505, essv6758372, essv6738055, essv6800433, essv6800434, essv6688458, essv6827942, essv6741275, essv6712421
SamplesSSM059, SSM027, SSM075, SSM045, SSM011, SSM079, SSM065, SSM087, SSM097, SSM009, SSM050, SSM088, SSM041, SSM057, SSM058, SSM021, SSM061, SSM029, SSM096, SSM062, SSM026, SSM035, SSM094, SSM032, SSM031, SSM044, SSM001, SSM014, SSM086, SSM006, SSM072, SSM078, SSM053, SSM080, SSM076, SSM052, SSM049, SSM056, SSM012
Known GenesCOL4A2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2748014
Frequency
Sample Size96
Observed Gain0
Observed Loss39
Observed Complex0
Frequencyn/a


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