A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2746830



Internal ID10327800
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:36267582..36267955hg38UCSC Ensembl
Outerchr1:36733183..36733556hg19UCSC Ensembl
Cytoband1p34.3
Allele length
AssemblyAllele length
hg38374
hg19374
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6666917, essv6925711, essv6941810, essv6868731, essv6933329, essv6695854, essv6967957, essv6766567, essv6669410, essv6810351, essv6916941, essv6816898, essv6753516, essv6910070, essv6950588, essv6797472, essv6725867, essv6904595, essv6744959, essv6914016, essv6710611, essv6950418, essv6859214, essv6816608, essv6954779, essv6836207, essv6972390, essv6738827, essv6769549, essv6929084, essv6748676, essv6853266, essv6917460, essv6843914, essv6773457, essv6714276, essv6789179, essv6784865, essv6764178, essv6707282, essv6946517
SamplesSSM008, SSM083, SSM024, SSM046, SSM064, SSM065, SSM087, SSM009, SSM042, SSM088, SSM041, SSM023, SSM058, SSM028, SSM090, SSM021, SSM029, SSM026, SSM017, SSM019, SSM003, SSM001, SSM066, SSM006, SSM085, SSM072, SSM020, SSM015, SSM078, SSM016, SSM005, SSM076, SSM010, SSM055, SSM070, SSM025, SSM004, SSM043, SSM052, SSM030, SSM063
Known GenesTHRAP3
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2746830
Frequency
Sample Size96
Observed Gain0
Observed Loss41
Observed Complex0
Frequencyn/a


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