A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2746538



Internal ID9980822
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:124431162..124431686hg38UCSC Ensembl
Outerchr12:124915708..124916232hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg38525
hg19525
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6851319, essv6940419, essv6834951, essv6870783, essv6885134
SamplesSSM090, SSM086, SSM082, SSM022, SSM095
Known GenesNCOR2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2746538
Frequency
Sample Size96
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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