A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2746226



Internal ID9980510
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:94275565..94275892hg38UCSC Ensembl
Outerchr12:94669341..94669668hg19UCSC Ensembl
Cytoband12q22
Allele length
AssemblyAllele length
hg38328
hg19328
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6806422, essv6834933, essv6702506, essv6866176, essv6908937, essv6851275, essv6819760, essv6965855, essv6857281, essv6927972, essv6787809, essv6800268, essv6720740
SamplesSSM027, SSM082, SSM086, SSM078, SSM072, SSM039, SSM011, SSM069, SSM087, SSM019, SSM044, SSM074, SSM014
Known GenesPLXNC1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2746226
Frequency
Sample Size96
Observed Gain0
Observed Loss13
Observed Complex0
Frequencyn/a


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