A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2745390



Internal ID9979674
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:1328807..1329458hg38UCSC Ensembl
Outerchr12:1437973..1438624hg19UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg38652
hg19652
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6741030, essv6749645, essv6970818, essv6728286, essv6842390, essv6677770, essv6698721, essv6916078, essv6760936, essv6920113, essv6936077, essv6800171, essv6873634, essv6691555, essv6834554, essv6758196, essv6735143, essv6831272, essv6838573, essv6940286, essv6879451, essv6803467, essv6897616, essv6944887, essv6732080, essv6768461, essv6688245, essv6949047, essv6685045, essv6716745, essv6870688, essv6927889, essv6876625, essv6827659, essv6900608, essv6965710, essv6857130, essv6717820, essv6806345, essv6959192, essv6862323, essv6772010, essv6823582, essv6908285
SamplesSSM010, SSM065, SSM022, SSM027, SSM092, SSM036, SSM091, SSM084, SSM061, SSM099, SSM043, SSM088, SSM090, SSM064, SSM035, SSM072, SSM016, SSM001, SSM032, SSM024, SSM083, SSM093, SSM100, SSM056, SSM017, SSM047, SSM073, SSM021, SSM002, SSM034, SSM087, SSM038, SSM046, SSM019, SSM023, SSM079, SSM052, SSM074, SSM004, SSM026, SSM049, SSM059, SSM081, SSM080
Known GenesERC1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2745390
Frequency
Sample Size96
Observed Gain0
Observed Loss44
Observed Complex0
Frequencyn/a


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