A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2745201



Internal ID9979485
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:125425875..125427009hg38UCSC Ensembl
Outerchr11:125295771..125296905hg19UCSC Ensembl
Cytoband11q24.2
Allele length
AssemblyAllele length
hg381135
hg191135
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6965686, essv6867072, essv6737851, essv6758188, essv6806329, essv6857112, essv6819629, essv6760927, essv6710676, essv6936061, essv6765735, essv6924270, essv6673069, essv6741017
SamplesSSM059, SSM027, SSM087, SSM050, SSM074, SSM021, SSM018, SSM061, SSM089, SSM031, SSM006, SSM078, SSM052, SSM063
Known GenesPKNOX2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2745201
Frequency
Sample Size96
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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