A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2744543



Internal ID10325513
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:56700372..56740265hg38UCSC Ensembl
Outerchr11:56467848..56507741hg19UCSC Ensembl
Cytoband11q12.1
Allele length
AssemblyAllele length
hg3839894
hg1939894
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6698671, essv6908739, essv6823522, essv6706100, essv6702316, essv6691490, essv6783448, essv6920023, essv6838507, essv6688185, essv6752476, essv6743929, essv6728218, essv6800078, essv6803398, essv6870635, essv6688184, essv6940198, essv6709392, essv6970664, essv6746740, essv6845858, essv6916013, essv6720571, essv6904793, essv6815353, essv6684973, essv6900545, essv6724380, essv6686476, essv6894545, essv6891162, essv6823520, essv6783449, essv6702317, essv6668140, essv6706101, essv6959073, essv6737387, essv6970218, essv6720570, essv6716669, essv6884995, essv6803397, essv6838506, essv6787640, essv6882229, essv6695426, essv6709391, essv6760873, essv6758135, essv6862238, essv6891161, essv6842313, essv6948954, essv6897567, essv6864742, essv6740957, essv6831191, essv6795905, essv6804621, essv6791735, essv6737808, essv6894546, essv6857010, essv6779327, essv6900546, essv6976936, essv6691489, essv6677686, essv6940199, essv6912468, essv6944791, essv6876557, essv6677687, essv6965588, essv6879396, essv6862239, essv6735099, essv6927819, essv6898165, essv6765696, essv6834770, essv6779328, essv6812129, essv6681456, essv6924211, essv6833932, essv6931703, essv6887913, essv6953090, essv6866981, essv6937985, essv6908738, essv6770775, essv6809271, essv6907773, essv6809272, essv6672957, essv6812128, essv6935997, essv6873571, essv6732005, essv6712598, essv6710321, essv6768403, essv6755442, essv6827589, essv6771941, essv6864753, essv6819548, essv6806277, essv6887914, essv6850980, essv6712875, essv6882228, essv6763307, essv6775592
SamplesSSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM050, SSM074, SSM042, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM028, SSM092, SSM084, SSM090, SSM021, SSM047, SSM018, SSM069, SSM061, SSM029, SSM096, SSM062, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM014, SSM086, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM030, SSM063, SSM012
Known GenesOR9G1, OR9G9
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2744543
Frequency
Sample Size96
Observed Gain0
Observed Loss95
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer