Variant Details

Variant: esv2743881

Internal ID

9978165

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr11:980047..980477	hg38	UCSC Ensembl
Outer	chr11:980047..980477	hg19	UCSC Ensembl

Cytoband

11p15.5

Allele length

Assembly	Allele length
hg38	431
hg19	431

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6760809, essv6809215, essv6749529, essv6800004, essv6897501, essv6720497, essv6900482, essv6779262, essv6931625, essv6804142, essv6736887, essv6702236, essv6775535, essv6803339, essv6709327, essv6907263, essv6884947, essv6743877, essv6915954, essv6768346, essv6863953, essv6716596, essv6712818, essv6684897, essv6912399, essv6870573, essv6887852, essv6908659, essv6891091, essv6668096, essv6976790, essv6672840, essv6771873, essv6904725, essv6691430, essv6969640, essv6706030, essv6882170, essv6834708, essv6795831, essv6935915, essv6876506, essv6842257, essv6688119, essv6685943, essv6770054, essv6815291, essv6924137, essv6894480, essv6827496, essv6806219, essv6698616, essv6783360, essv6838438

Samples

SSM100, SSM036, SSM008, SSM083, SSM071, SSM075, SSM011, SSM064, SSM065, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM074, SSM042, SSM002, SSM041, SSM092, SSM084, SSM090, SSM021, SSM018, SSM061, SSM029, SSM096, SSM035, SSM094, SSM031, SSM067, SSM044, SSM014, SSM066, SSM068, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM016, SSM053, SSM005, SSM080, SSM077, SSM095, SSM034, SSM004, SSM099, SSM043, SSM098, SSM056, SSM030

Known Genes

AP2A2

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2743881

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	54
Observed Complex	0
Frequency	n/a