Variant Details

Variant: esv2743654

Internal ID

9977938

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr10:132351816..132352862	hg38	UCSC Ensembl
Outer	chr10:134165320..134166366	hg19	UCSC Ensembl

Cytoband

10q26.3

Allele length

Assembly	Allele length
hg38	1047
hg19	1047

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6709318, essv6783342, essv6779245, essv6706011, essv6958898, essv6702223, essv6681384, essv6775507, essv6850840, essv6970560, essv6866857, essv6795801, essv6952988, essv6915934, essv6834686, essv6838405, essv6677598, essv6873518, essv6897490, essv6787547, essv6668089, essv6708486, essv6691416, essv6976758, essv6863886, essv6827478, essv6791631, essv6684888, essv6876494, essv6799981, essv6927737, essv6769909, essv6845786, essv6755370, essv6969540, essv6809208, essv6749514, essv6912372, essv6815263, essv6937263, essv6919945, essv6842234, essv6712803, essv6688111, essv6791629, essv6819448, essv6887835, essv6743869, essv6862126, essv6812062, essv6879335, essv6791630, essv6948845, essv6823413

Samples

SSM036, SSM008, SSM083, SSM071, SSM024, SSM075, SSM011, SSM079, SSM039, SSM093, SSM042, SSM088, SSM041, SSM058, SSM028, SSM092, SSM084, SSM069, SSM029, SSM096, SSM026, SSM089, SSM017, SSM019, SSM035, SSM032, SSM003, SSM067, SSM001, SSM086, SSM033, SSM066, SSM085, SSM068, SSM040, SSM072, SSM082, SSM015, SSM078, SSM016, SSM053, SSM080, SSM077, SSM076, SSM091, SSM070, SSM025, SSM034, SSM004, SSM099, SSM056, SSM030

Known Genes

LRRC27

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2743654

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	52
Observed Complex	0
Frequency	n/a