Variant Details

Variant: esv2741228

Internal ID

10295344

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr10:115952084..115952492	hg38	UCSC Ensembl
Outer	chr10:117711595..117712003	hg19	UCSC Ensembl

Cytoband

10q25.3

Allele length

Assembly	Allele length
hg38	409
hg19	409

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv6838369, essv6677572, essv6870546, essv6799940, essv6862078, essv6952947, essv6894430, essv6912336, essv6863642, essv6831068, essv6731865, essv6724237, essv6842194, essv6891048, essv6927711, essv6809184, essv6812038, essv6856795, essv6803306, essv6684869, essv6783300, essv6736476, essv6771811, essv6884917, essv6705988, essv6931559, essv6876466, essv6823381, essv6712780, essv6915903, essv6969296, essv6879316, essv6720436, essv6970520, essv6806193, essv6827441, essv6695283, essv6672742, essv6887808, essv6965357, essv6958820, essv6948805, essv6702192, essv6873494, essv6795766, essv6768306, essv6691387, essv6681349, essv6906941, essv6850773, essv6746636, essv6900448, essv6698582, essv6834666, essv6728081, essv6944639

Samples

SSM100, SSM036, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM073, SSM093, SSM074, SSM042, SSM088, SSM002, SSM023, SSM028, SSM092, SSM084, SSM090, SSM047, SSM096, SSM026, SSM019, SSM032, SSM031, SSM044, SSM086, SSM033, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM016, SSM080, SSM037, SSM076, SSM091, SSM055, SSM095, SSM025, SSM034, SSM004, SSM098

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2741228

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	56
Observed Complex	0
Frequency	n/a