Variant DetailsVariant: esv2740175 | Internal ID | 9974517 | | Landmark | | | Location Information | | | Cytoband | Xp11.21 | | Allele length | | Assembly | Allele length | | hg38 | 2789608 | | hg19 | 2787012 |
| | Variant Type | CNV deletion | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | essv6680890, essv6765317, essv6927278, essv6911838, essv6965361, essv6805833, essv6849934, essv6690934, essv6719933, essv6911837, essv6822905, essv6873157, essv6708861, essv6746291, essv6957868, essv6802942, essv6969941, essv6671883, essv6765310, essv6881795, essv6893995, essv6677053, essv6969939, essv6859531, essv6841738, essv6845383, essv6964556, essv6740407, essv6765321, essv6808802, essv6826923, essv6690935, essv6834245, essv6719934, essv6900089, essv6811695, essv6931004, essv6786955, essv6749119, essv6771326, essv6855979, essv6876115, essv6837926, essv6712337, essv6731365, essv6791058, essv6861468, essv6698244, essv6948333, essv6667839, essv6884591, essv6932840, essv6751986, essv6751988, essv6802944, essv6908111, essv6671885, essv6674820, essv6740408, essv6814772, essv6734691, essv6931003, essv6932829, essv6680891, essv6818800, essv6897117, essv6855980, essv6890642, essv6671888, essv6849936, essv6701619, essv6834244, essv6919399, essv6684433, essv6740406, essv6904210, essv6712336, essv6944026, essv6723760, essv6698243, essv6887411, essv6754944, essv6757730, essv6870174, essv6743497, essv6687682, essv6799419, essv6818799, essv6694741, essv6849938, essv6775044, essv6708862, essv6855978, essv6682321, essv6706832, essv6732554, essv6957870, essv6975709, essv6732543, essv6737338, essv6826921, essv6716032, essv6957871, essv6795188, essv6965350, essv6782744, essv6826922, essv6694740, essv6948332, essv6746290, essv6944027, essv6732532, essv6808801, essv6861467, essv6808803, essv6712335, essv6903730, essv6767929, essv6682343, essv6760413, essv6964554, essv6904209, essv6861465, essv6964557, essv6866210, essv6866207, essv6919398, essv6915514, essv6952437, essv6705522, essv6911839, essv6964555, essv6765318, essv6935261, essv6671884, essv6845384, essv6923566, essv6701620, essv6975708, essv6799676, essv6866208, essv6878972, essv6830654, essv6855977, essv6818801, essv6690936, essv6799665, essv6775043, essv6903741, essv6876114, essv6884592, essv6694742, essv6687684, essv6849935, essv6778731, essv6881794, essv6890641, essv6762934, essv6743498, essv6829598, essv6767930, essv6667840, essv6706821, essv6849937, essv6682332, essv6799417, essv6687683, essv6723759, essv6834242, essv6727614, essv6775040, essv6671886, essv6939544, essv6975703, essv6957867, essv6805831, essv6677052, essv6757729, essv6771327, essv6939543, essv6760414, essv6923567, essv6795186, essv6975704, essv6786953, essv6866211, essv6671889, essv6680892, essv6892399, essv6908112, essv6778730, essv6861466, essv6957869, essv6791059, essv6927279, essv6719935, essv6731366, essv6799418 | | Samples | SSM010, SSM065, SSM022, SSM007, SSM027, SSM092, SSM013, SSM053, SSM082, SSM086, SSM006, SSM036, SSM055, SSM091, SSM033, SSM084, SSM061, SSM099, SSM042, SSM040, SSM078, SSM043, SSM088, SSM089, SSM090, SSM064, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM016, SSM057, SSM001, SSM032, SSM039, SSM024, SSM045, SSM067, SSM094, SSM083, SSM050, SSM097, SSM041, SSM077, SSM062, SSM005, SSM012, SSM093, SSM100, SSM056, SSM085, SSM017, SSM009, SSM011, SSM066, SSM028, SSM029, SSM003, SSM095, SSM030, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM034, SSM063, SSM087, SSM038, SSM046, SSM019, SSM096, SSM023, SSM079, SSM052, SSM068, SSM044, SSM074, SSM004, SSM075, SSM015, SSM026, SSM014, SSM049, SSM008, SSM098, SSM018, SSM076, SSM058, SSM059, SSM081, SSM070, SSM080 | | Known Genes | ALAS2, APEX2, FAM104B, FAM120C, FAM156A, FAM156B, FGD1, FOXR2, GNL3L, GPR173, HSD17B10, HUWE1, IQSEC2, ITIH6, KDM5C, MAGED2, MAGEH1, MIR4536-1, MIR6857, MIR6894, MIR6895, MIR98, MIRLET7F2, MTRNR2L10, PAGE2, PAGE2B, PAGE3, PAGE5, PFKFB1, PHF8, RIBC1, SMC1A, SNORA11, TRO, TSPYL2, TSR2, USP51, WNK3, XAGE3 | | Method | Sequencing | | Analysis | Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads | | Platform | Illumina HiSeq 2000 | | Comments | | | Reference | Wong_et_al_2012b | | Pubmed ID | 23290073 | | Accession Number(s) | esv2740175
| | Frequency | | Sample Size | 96 | | Observed Gain | 0 | | Observed Loss | 96 | | Observed Complex | 0 | | Frequency | n/a |
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