A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2739862



Internal ID9974203
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:97275104..97277631hg38UCSC Ensembl
Outerchr10:99034861..99037388hg19UCSC Ensembl
Cytoband10q24.1
Allele length
AssemblyAllele length
hg382528
hg192528
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6970501, essv6769431, essv6677556, essv6705970, essv6803294, essv6799926, essv6672720, essv6758035, essv6952936, essv6746625, essv6681333, essv6695263, essv6795749, essv6704931, essv6827424, essv6912317, essv6935835, essv6894418, essv6948791, essv6856774, essv6712768, essv6763223, essv6809175, essv6783285, essv6838357, essv6815219, essv6668068, essv6887797, essv6931542, essv6897448, essv6803643, essv6685554, essv6842174, essv6823363, essv6765614, essv6845737, essv6728067, essv6831049, essv6749478, essv6760761, essv6737695, essv6688071, essv6731843, essv6876456, essv6884905, essv6927701, essv6787480, essv6724222, essv6900433, essv6720421, essv6879302, essv6743833, essv6896821, essv6870533, essv6904661, essv6698567, essv6709275, essv6924056, essv6702170, essv6965333, essv6976652, essv6866797, essv6768297, essv6735010, essv6775459, essv6755337, essv6832987, essv6684856, essv6958799, essv6908597, essv6752377, essv6882128, essv6806182, essv6863498, essv6940042, essv6709453, essv6716511, essv6850754, essv6771792, essv6919876, essv6915897, essv6834651, essv6691371, essv6791567, essv6812026, essv6969185, essv6936740, essv6891033, essv6862059, essv6779190, essv6873483, essv6944615, essv6736342, essv6819386, essv6906841, essv6740829
SamplesSSM010, SSM065, SSM022, SSM007, SSM027, SSM092, SSM013, SSM053, SSM082, SSM086, SSM006, SSM036, SSM055, SSM091, SSM033, SSM084, SSM061, SSM099, SSM042, SSM040, SSM078, SSM043, SSM088, SSM089, SSM090, SSM064, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM016, SSM057, SSM001, SSM032, SSM039, SSM024, SSM045, SSM067, SSM094, SSM083, SSM050, SSM097, SSM041, SSM077, SSM062, SSM005, SSM012, SSM093, SSM100, SSM056, SSM085, SSM017, SSM009, SSM011, SSM066, SSM028, SSM029, SSM003, SSM095, SSM030, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM034, SSM063, SSM087, SSM038, SSM046, SSM019, SSM096, SSM023, SSM079, SSM052, SSM068, SSM044, SSM074, SSM004, SSM075, SSM015, SSM026, SSM014, SSM049, SSM008, SSM098, SSM018, SSM076, SSM058, SSM059, SSM081, SSM070, SSM080
Known GenesARHGAP19, ARHGAP19-SLIT1
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2739862
Frequency
Sample Size96
Observed Gain0
Observed Loss96
Observed Complex0
Frequencyn/a


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