A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2739197



Internal ID9973538
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:133998547..133998837hg38UCSC Ensembl
Outerchr9:136863669..136863959hg19UCSC Ensembl
Cytoband9q34.2
Allele length
AssemblyAllele length
hg38291
hg19291
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6672497, essv6795617, essv6791434, essv6861890, essv6958548, essv6927580, essv6862598, essv6850540, essv6691257, essv6695106, essv6834542, essv6712650, essv6811927, essv6965115, essv6724106, essv6720310, essv6931395, essv6823238, essv6827294, essv6944459, essv6976368, essv6779057, essv6819212, essv6815112, essv6845642, essv6935684, essv6838244, essv6919732, essv6799798, essv6809083, essv6912193, essv6939919, essv6731712, essv6702023, essv6866627, essv6856570, essv6787337, essv6783113, essv6948644, essv6908466, essv6890931
SamplesSSM036, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM011, SSM079, SSM087, SSM097, SSM039, SSM042, SSM088, SSM023, SSM047, SSM069, SSM029, SSM026, SSM089, SSM017, SSM019, SSM003, SSM031, SSM067, SSM044, SSM014, SSM086, SSM085, SSM068, SSM072, SSM082, SSM020, SSM015, SSM078, SSM080, SSM037, SSM077, SSM076, SSM022, SSM070
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2739197
Frequency
Sample Size96
Observed Gain0
Observed Loss41
Observed Complex0
Frequencyn/a


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