A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2739179



Internal ID9973520
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:133760005..133761142hg38UCSC Ensembl
Outerchr9:136625127..136626264hg19UCSC Ensembl
Cytoband9q34.2
Allele length
AssemblyAllele length
hg381138
hg191138
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6927577, essv6712647, essv6677424, essv6775328, essv6668013, essv6749379, essv6819210, essv6882038, essv6695103, essv6905885, essv6866625, essv6870446, essv6890928, essv6716354, essv6834539, essv6746534, essv6752271, essv6895587, essv6809082, essv6681207, essv6783111, essv6763130, essv6948641, essv6811926, essv6894297, essv6873396, essv6823235, essv6731707, essv6842044, essv6684754, essv6740725, essv6765535, essv6757955, essv6944457, essv6884825, essv6737606, essv6727946, essv6734923, essv6912190, essv6779056, essv6856567, essv6965108, essv6827290, essv6935673, essv6935665, essv6702020, essv6760682, essv6915782, essv6684749, essv6968140, essv6705847, essv6768201, essv6815110, essv6768331, essv6838240, essv6799795, essv6787335, essv6771662, essv6845639, essv6735410, essv6709174, essv6939915, essv6976366, essv6952793, essv6803214, essv6696931, essv6691253, essv6958545, essv6724103, essv6720304, essv6795613, essv6876361, essv6755226, essv6879218, essv6698489, essv6861887, essv6887693, essv6919730, essv6708676, essv6862564, essv6904537, essv6897352, essv6830935, essv6791429, essv6687973, essv6931393, essv6802632, essv6672494, essv6743738, essv6900338
SamplesSSM100, SSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM024, SSM075, SSM045, SSM046, SSM011, SSM064, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM013, SSM009, SSM073, SSM093, SSM050, SSM042, SSM088, SSM002, SSM041, SSM057, SSM023, SSM058, SSM092, SSM084, SSM090, SSM021, SSM047, SSM069, SSM061, SSM029, SSM096, SSM062, SSM026, SSM089, SSM017, SSM019, SSM035, SSM094, SSM032, SSM003, SSM031, SSM067, SSM044, SSM001, SSM033, SSM066, SSM006, SSM085, SSM068, SSM081, SSM040, SSM072, SSM082, SSM020, SSM007, SSM015, SSM078, SSM016, SSM053, SSM005, SSM080, SSM037, SSM077, SSM076, SSM022, SSM091, SSM055, SSM070, SSM095, SSM025, SSM034, SSM004, SSM099, SSM043, SSM052, SSM098, SSM049, SSM056, SSM030, SSM063, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2739179
Frequency
Sample Size96
Observed Gain0
Observed Loss90
Observed Complex0
Frequencyn/a


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