A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2739099



Internal ID10322735
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:130277539..130278053hg38UCSC Ensembl
Outerchr9:133039818..133040332hg19UCSC Ensembl
Cytoband9q34.11
Allele length
AssemblyAllele length
hg38515
hg19515
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6783101, essv6743731, essv6760674, essv6838228, essv6970332, essv6791419, essv6779048, essv6815103, essv6806080, essv6948633, essv6856547, essv6819197, essv6873393, essv6735377, essv6765528, essv6850526, essv6716347, essv6834528, essv6712642, essv6842034, essv6976344, essv6894291, essv6935658, essv6695095, essv6752262, essv6965093, essv6884817, essv6958530, essv6912180, essv6927569, essv6687963, essv6823228, essv6919720, essv6708643, essv6768253
SamplesSSM008, SSM083, SSM027, SSM024, SSM079, SSM087, SSM074, SSM042, SSM057, SSM028, SSM084, SSM021, SSM061, SSM029, SSM026, SSM017, SSM019, SSM035, SSM067, SSM086, SSM006, SSM068, SSM082, SSM007, SSM015, SSM078, SSM053, SSM037, SSM077, SSM091, SSM070, SSM095, SSM043, SSM098, SSM063
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2739099
Frequency
Sample Size96
Observed Gain0
Observed Loss35
Observed Complex0
Frequencyn/a


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