A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738893



Internal ID10322529
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:107255986..107258547hg38UCSC Ensembl
Outerchr9:110018267..110020828hg19UCSC Ensembl
Cytoband9q31.2
Allele length
AssemblyAllele length
hg382562
hg192562
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6809058, essv6912156, essv6935418, essv6952766, essv6845618, essv6763107, essv6687942, essv6768177, essv6783073, essv6799771, essv6752237, essv6965059, essv6672446, essv6919702, essv6819168, essv6970299, essv6976308, essv6735198, essv6771630, essv6684725, essv6677391, essv6705817, essv6948612, essv6866590, essv6850500, essv6935633, essv6755196, essv6895266, essv6862331, essv6743707, essv6827268, essv6667995, essv6694931, essv6791398, essv6831775
SamplesSSM027, SSM024, SSM075, SSM011, SSM064, SSM065, SSM057, SSM058, SSM028, SSM021, SSM029, SSM062, SSM089, SSM017, SSM035, SSM032, SSM003, SSM031, SSM001, SSM086, SSM085, SSM068, SSM040, SSM072, SSM007, SSM015, SSM078, SSM053, SSM080, SSM010, SSM070, SSM025, SSM034, SSM030, SSM012
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738893
Frequency
Sample Size96
Observed Gain0
Observed Loss35
Observed Complex0
Frequencyn/a


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