A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738886



Internal ID10322522
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:106261813..106262144hg38UCSC Ensembl
Outerchr9:109024094..109024425hg19UCSC Ensembl
Cytoband9q31.2
Allele length
AssemblyAllele length
hg38332
hg19332
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6806059, essv6819166, essv6965057, essv6927546, essv6908435, essv6783072, essv6890905, essv6958488, essv6672444, essv6856509, essv6712624, essv6731681, essv6882016, essv6838214, essv6795588, essv6952765, essv6900319, essv6811911, essv6779025, essv6887671, essv6691226, essv6830910, essv6720283, essv6884804, essv6677390, essv6687941, essv6976304, essv6904510, essv6862309, essv6709145, essv6809057, essv6827267, essv6948610, essv6850497, essv6923867, essv6799769
SamplesSSM100, SSM036, SSM083, SSM071, SSM027, SSM024, SSM075, SSM011, SSM087, SSM097, SSM013, SSM074, SSM042, SSM041, SSM047, SSM018, SSM029, SSM096, SSM026, SSM019, SSM035, SSM094, SSM032, SSM031, SSM067, SSM044, SSM014, SSM086, SSM068, SSM081, SSM072, SSM078, SSM080, SSM076, SSM095, SSM025
Known Genes
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738886
Frequency
Sample Size96
Observed Gain0
Observed Loss36
Observed Complex0
Frequencyn/a


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