A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738858



Internal ID9973199
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:103014480..103015020hg38UCSC Ensembl
Outerchr9:105776762..105777302hg19UCSC Ensembl
Cytoband9q31.1
Allele length
AssemblyAllele length
hg38541
hg19541
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6783069, essv6895231, essv6861847, essv6779022, essv6731677, essv6879194, essv6965054, essv6923860, essv6856503, essv6935374, essv6831720, essv6681178, essv6694487, essv6935626, essv6912153, essv6775304, essv6958486, essv6919699, essv6915756, essv6845615, essv6811906, essv6876336, essv6908430
SamplesSSM027, SSM087, SSM093, SSM088, SSM092, SSM021, SSM047, SSM018, SSM026, SSM017, SSM003, SSM067, SSM001, SSM014, SSM033, SSM066, SSM085, SSM068, SSM015, SSM016, SSM076, SSM010, SSM012
Known GenesCYLC2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738858
Frequency
Sample Size96
Observed Gain0
Observed Loss23
Observed Complex0
Frequencyn/a


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