A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2738857



Internal ID9973198
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:103014266..103015474hg38UCSC Ensembl
Outerchr9:105776548..105777756hg19UCSC Ensembl
Cytoband9q31.1
Allele length
AssemblyAllele length
hg381209
hg191209
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv6731677, essv6775304, essv6735154, essv6811906, essv6965054, essv6935374, essv6763102, essv6757930, essv6743704, essv6779022, essv6760655, essv6861847, essv6734893, essv6765507, essv6915756, essv6879194, essv6976300, essv6895231, essv6681178, essv6908430, essv6783069, essv6694487, essv6672439, essv6768020, essv6752234, essv6737572, essv6740689, essv6755193, essv6827262, essv6856503, essv6845615, essv6749346, essv6912153, essv6876336, essv6819161, essv6935626, essv6923860, essv6831720, essv6919699, essv6905596, essv6958486, essv6667993
SamplesSSM010, SSM007, SSM027, SSM092, SSM053, SSM033, SSM061, SSM078, SSM088, SSM031, SSM016, SSM057, SSM001, SSM067, SSM050, SSM062, SSM012, SSM093, SSM056, SSM085, SSM017, SSM066, SSM029, SSM003, SSM030, SSM047, SSM021, SSM002, SSM063, SSM087, SSM052, SSM068, SSM015, SSM026, SSM014, SSM049, SSM008, SSM018, SSM076, SSM058, SSM059, SSM080
Known GenesCYLC2
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)esv2738857
Frequency
Sample Size96
Observed Gain0
Observed Loss42
Observed Complex0
Frequencyn/a


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